Contact information
Research groups
Sandi Yen
Bioinformatician in Microbiome Science
I joined the Oxford Centre for Microbiome Studies at the Kennedy Institute of Rheumatology as a bioinformatics scientist after completing my PhD in Molecular and Cellular Biology at the University of Guelph, Canada. Trained in microbiology, biochemistry, and bioinformatics, I find the cross-disciplinary nature of microbiome research particularly exciting. I am interested in taking integrative approaches to understand the microbiome (human or otherwise) within the context of the host by applying multi-omic tools. My experience in microbiome research includes NMR-based metabolomics and 16S rRNA gene sequencing, and the associated bioinformatics analyses and pipeline development in R, as well as the culture of anaerobic bacteria and in vitro culture of microbial communities.
Recent publications
Intravenous iron for the treatment of iron deficiency in adults with cystic fibrosis: a prospective observational cohort study.
Journal article
Talbot NP. et al, (2025), Eur Respir J, 66
isolateR: an R package for generating microbial libraries from Sanger sequencing data.
Journal article
Daisley B. et al, (2024), Bioinformatics, 40
pro-inflammatory gut mucosal cytokine response is associated with mild COVID-19 disease and superior induction of serum antibodies.
Journal article
Costigan D. et al, (2024), Mucosal Immunol, 17, 111 - 123
Changes in intestinal permeability and gut microbiota following diet-induced weight loss in patients with metabolic dysfunction-associated steatohepatitis and liver fibrosis.
Journal article
Koutoukidis DA. et al, (2024), Gut Microbes, 16
The effects of a hydrolyzed protein diet on the plasma, fecal and urine metabolome in cats with chronic enteropathy.
Journal article
Kathrani A. et al, (2023), Sci Rep, 13